build_pathway.py File Reference

Classes
class	bin.build_pathway.Pathway

Namespaces
	bin.build_pathway
	bin.build_pathway.py
	The atrial-model-generation tool is an almost automatic workflow for the generation of patient-specific volumetric atrial models.

Functions
def	bin.build_pathway.argument_parser ()
def	bin.build_pathway.jobID (args)
def	bin.build_pathway.check_binary_mesh (job, meshname)
def	bin.build_pathway.parse_mt_query_file (filename, pt_type)
def	bin.build_pathway.parse_meshtool_tag_file (filename)
def	bin.build_pathway.displace_nodes (mesh_points, raw_nodes_list)
def	bin.build_pathway.write_nodes (filename, nodes_list)
def	bin.build_pathway.closest_node (query_point, point_set, thr=0.0)
def	bin.build_pathway.gen_conn_dict (mesh_points, nodes_list, base_filename)
def	bin.build_pathway.compute_paths (job, args, meshname, nodes, tags=None, build_split=True)
def	bin.build_pathway.main (args, job)

Variables
string	bin.build_pathway.MESHTOOL = 'meshtool'
string	bin.build_pathway.MGTAGREG = 'mgtagreg'
tuple	bin.build_pathway.NODES_ORDER = ('insert', 'exit', 'insert2', 'exit2','con_insert', 'con_exit')
dictionary	bin.build_pathway.CONNECTIONS_DEFAULT_SPLIT
dictionary	bin.build_pathway.CONNECTIONS_DEFAULT = {'split':{'conn': ['insert', 'exit']}}
dictionary	bin.build_pathway.SEARCH_CONNECTION = {'insert','exit'}