electrics.cc File Reference

Tissue level electrics, main Electrics physics class. More...

#include "electrics.h"
#include "petsc_utils.h"
#include "timers.h"
#include "stimulate.h"
#include "electric_integrators.h"
#include "SF_init.h"

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Namespaces
	opencarp

Functions
void	opencarp::set_elec_tissue_properties (MaterialType *mtype, Electrics::grid_t g, FILE_SPEC logger)
	Fill the RegionSpec of an electrics grid with the associated inputs from the param parameters. More...
void	opencarp::balance_electrode (SF::vector< stimulus > &stimuli, int balance_from, int balance_to)
void	opencarp::apply_stim_to_vector (const stimulus &s, sf_vec &vec, bool add)
void	opencarp::compute_restr_idx (sf_mesh &mesh, SF::vector< mesh_int_t > &inp_idx, SF::vector< mesh_int_t > &idx)
void	opencarp::compute_restr_idx_async (sf_mesh &mesh, SF::vector< mesh_int_t > &inp_idx, SF::vector< mesh_int_t > &idx)
void	opencarp::setup_dataout (const int dataout, std::string dataout_vtx, mesh_t grid, SF::vector< mesh_int_t > *&restr, bool async=false)
int	opencarp::stimidx_from_timeridx (const SF::vector< stimulus > &stimuli, const int timer_id)
	determine link between timer and stimulus More...
void	opencarp::get_kappa (sf_vec &kappa, IMPregion *ir, limpet::MULTI_IF &miif, double k)
	compute the vector More...
void	opencarp::set_cond_type (MaterialType &m, cond_t type)
bool	opencarp::have_dbc_stims (const SF::vector< stimulus > &stimuli)
	return wheter any stimuli require dirichlet boundary conditions More...
const char *	opencarp::get_tsav_ext (double time)
void	opencarp::print_act_log (FILE_SPEC logger, const SF::vector< Activation > &acts, int idx)
int	opencarp::output_all_activations (FILE_SPEC fp, int *ibuf, double *act_tbuf, int nlacts)
void	opencarp::recover_phie_std (sf_vec &vm, phie_recovery_data &rcv)
int	opencarp::postproc_recover_phie ()
void	opencarp::setup_phie_recovery_data (phie_recovery_data &data)
void	opencarp::constant_total_stimulus_current (SF::vector< stimulus > &stimuli, sf_mat &mass_i, sf_mat &mass_e, limpet::MULTI_IF *miif, FILE_SPEC logger)

Detailed Description

Tissue level electrics, main Electrics physics class.

Author

Aurel Neic, Gernot Plank, Edward Vigmond

Version

Date

2019-10-25

Definition in file electrics.cc.