electrics.cc File Reference

Tissue level electrics, main Electrics physics class. More...

#include "electrics.h"
#include "petsc_utils.h"
#include "timers.h"
#include "stimulate.h"
#include "electric_integrators.h"
#include "SF_init.h"

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Namespaces
	opencarp

Functions
void	opencarp::set_elec_tissue_properties (MaterialType *mtype, Electrics::grid_t g, FILE_SPEC logger)
	Fill the RegionSpec of an electrics grid with the associated inputs from the param parameters. More...
void	opencarp::balance_electrode (elliptic_solver &ellip, SF::vector< stimulus > &stimuli, int balance_from, int balance_to)
void	opencarp::apply_stim_to_vector (const stimulus &s, sf_vec &vec, bool add)
void	opencarp::compute_restr_idx (sf_mesh &mesh, SF::vector< mesh_int_t > &inp_idx, SF::vector< mesh_int_t > &idx)
void	opencarp::compute_restr_idx_async (sf_mesh &mesh, SF::vector< mesh_int_t > &inp_idx, SF::vector< mesh_int_t > &idx)
void	opencarp::setup_dataout (const int dataout, std::string dataout_vtx, mesh_t grid, SF::vector< mesh_int_t > *&restr, bool async)
int	opencarp::stimidx_from_timeridx (const SF::vector< stimulus > &stimuli, const int timer_id)
	determine link between timer and stimulus More...
void	opencarp::get_kappa (sf_vec &kappa, IMPregion *ir, limpet::MULTI_IF &miif, double k)
	compute the vector More...
void	opencarp::set_cond_type (MaterialType &m, cond_t type)
bool	opencarp::have_dbc_stims (const SF::vector< stimulus > &stimuli)
	return wheter any stimuli require dirichlet boundary conditions More...
const char *	opencarp::get_tsav_ext (double time)
void	opencarp::print_act_log (FILE_SPEC logger, const SF::vector< Activation > &acts, int idx)
int	opencarp::output_all_activations (FILE_SPEC fp, int *ibuf, double *act_tbuf, int nlacts)
void	opencarp::recover_phie_std (sf_vec &vm, phie_recovery_data &rcv)
int	opencarp::postproc_recover_phie ()
void	opencarp::setup_phie_recovery_data (phie_recovery_data &data)
void	opencarp::constant_total_stimulus_current (SF::vector< stimulus > &simuli, sf_mat &mass_i, sf_mat &mass_e, limpet::MULTI_IF *miif, FILE_SPEC logger)
	Scales stimulus current to maintain constant total current across affected regions. More...

Detailed Description

Tissue level electrics, main Electrics physics class.

Author

Aurel Neic, Gernot Plank, Edward Vigmond

Version

Date

2019-10-25

Definition in file electrics.cc.