carputils.ecg Namespace Reference

Some tools to assist in post-processing recovered ecg signals using openCARP. More...

Functions
def	magnitude (v)
def	export_json (t, dict traces, str json_fname)
def	calc_ecg_features (_t, outdata_filt, Vm, params=None, silent=False)
def	calc_std_ecg (data, vl3D_method='kors')
def	filter_std_ecg (ecg_data, filter_order=2, freq_lowpass=150.0, freq_highpass=0.5, freq_bandstop=(48., 52.))
def	save_std_ecg (t, data, data_filt, filepath='.', filebase=None)
def	save_features (f_list, filepath='.')
def	savefig_einthoven (t, outdata, outdata_filt, params=None, filepath='.', compress=None, silent=False)
def	savefig_goldberger (t, outdata, outdata_filt, params=None, filepath='.', compress=None, silent=False)
def	savefig_wilson (t, outdata, outdata_filt, params=None, filepath='.', compress=1.0, silent=False)
def	savefig_vectorloop (t, outdata, outdata_filt, params=None, filepath='./', mtime=None, loop_meth=None, silent=False)
def	show_frequency_response (t, order, freq_lowpass, freq_highpass, freq_bandstop, silent=False)
def	get_equal_bbox (xdata, ydata, zdata)
def	vectorloop_plot3D (_t, outdata, outdata_filt, features, filepath='./', params=None, loop_method=None, silent=False)
def	vectorloop_plot2D (_t, outdata, outdata_filt, features, filepath='./', params=None, loop_method=None, silent=False)
def	mydatestring ()
def	randomID ()
def	set_subfig_props (ax, bbox=None, text=None, fontsize=None, useGrid=True, nx_ticks=None, ny_ticks=None, figaspect=None, clip_on=False)
def	electrogram (_t, outdata, outdata_filt, features, filepath='./', params=None, freq_lowpass=None, freq_highpass=None, nx_ticks=None, ny_ticks=None, mtime=None, silent=False)
def	pcolormap (_t, outdata, outdata_filt, features, filepath='./', params=None, silent=False)
def	periodogram_plot (t, outdata, outdata_filt, semilog=True, filepath='./', silent=False)
def	readfile (input, sample_time=None, silent=False)
def	get_plot_range (t, params=None)
def	get_QRS_inds (t, I, Rindx=None)
def	get_dQRS (t, _data, thresh=0.)

Variables
	fopen = open
	usetex
	edgecolor
	color
	linestyle
	dpi
	transparent
	simplify

Detailed Description

Some tools to assist in post-processing recovered ecg signals using openCARP.

input ... Recovered extracellular potentials output file derived from an openCARP simulation. Can be compressed. freq_lowpass ... Cutoff-frequency for lowpass filter (Bessel). Recommended 40, 100, [150Hz]. freq_highpass ... Cutoff-frequency for highpass filter (Bessel). Recommended [0.05], 0.5, 1.0Hz'. filter_order ... Order of lowpass, highpass or bandstop filter (Bessel). Default [4]

Function Documentation

calc_ecg_features()

def carputils.ecg.calc_ecg_features	(		_t,
			outdata_filt,
			Vm,
			params = None,
			silent = False
	)

calc_std_ecg()

def carputils.ecg.calc_std_ecg	(		data,
			vl3D_method = 'kors'
	)

electrogram()

def carputils.ecg.electrogram	(		_t,
			outdata,
			outdata_filt,
			features,
			filepath = './',
			params = None,
			freq_lowpass = None,
			freq_highpass = None,
			nx_ticks = None,
			ny_ticks = None,
			mtime = None,
			silent = False
	)

export_json()

def carputils.ecg.export_json	(		t,
		dict	traces,
		str	json_fname
	)

filter_std_ecg()

def carputils.ecg.filter_std_ecg	(		ecg_data,
			filter_order = 2,
			freq_lowpass = 150.0,
			freq_highpass = 0.5,
			freq_bandstop = (48., 52.)
	)

get_dQRS()

def carputils.ecg.get_dQRS	(		t,
			_data,
			thresh = 0.
	)

get_equal_bbox()

def carputils.ecg.get_equal_bbox	(		xdata,
			ydata,
			zdata
	)

get_plot_range()

def carputils.ecg.get_plot_range	(		t,
			params = None
	)

get_QRS_inds()

def carputils.ecg.get_QRS_inds	(		t,
			I,
			Rindx = None
	)

magnitude()

def carputils.ecg.magnitude

(

v

)

mydatestring()

def carputils.ecg.mydatestring

(

)

pcolormap()

def carputils.ecg.pcolormap	(		_t,
			outdata,
			outdata_filt,
			features,
			filepath = './',
			params = None,
			silent = False
	)

periodogram_plot()

def carputils.ecg.periodogram_plot	(		t,
			outdata,
			outdata_filt,
			semilog = True,
			filepath = './',
			silent = False
	)

randomID()

def carputils.ecg.randomID

(

)

readfile()

def carputils.ecg.readfile	(		input,
			sample_time = None,
			silent = False
	)

save_features()

def carputils.ecg.save_features	(		f_list,
			filepath = '.'
	)

save_std_ecg()

def carputils.ecg.save_std_ecg	(		t,
			data,
			data_filt,
			filepath = '.',
			filebase = None
	)

savefig_einthoven()

def carputils.ecg.savefig_einthoven	(		t,
			outdata,
			outdata_filt,
			params = None,
			filepath = '.',
			compress = None,
			silent = False
	)

savefig_goldberger()

def carputils.ecg.savefig_goldberger	(		t,
			outdata,
			outdata_filt,
			params = None,
			filepath = '.',
			compress = None,
			silent = False
	)

savefig_vectorloop()

def carputils.ecg.savefig_vectorloop	(		t,
			outdata,
			outdata_filt,
			params = None,
			filepath = './',
			mtime = None,
			loop_meth = None,
			silent = False
	)

savefig_wilson()

def carputils.ecg.savefig_wilson	(		t,
			outdata,
			outdata_filt,
			params = None,
			filepath = '.',
			compress = 1.0,
			silent = False
	)

set_subfig_props()

def carputils.ecg.set_subfig_props	(		ax,
			bbox = None,
			text = None,
			fontsize = None,
			useGrid = True,
			nx_ticks = None,
			ny_ticks = None,
			figaspect = None,
			clip_on = False
	)

show_frequency_response()

def carputils.ecg.show_frequency_response	(		t,
			order,
			freq_lowpass,
			freq_highpass,
			freq_bandstop,
			silent = False
	)

vectorloop_plot2D()

def carputils.ecg.vectorloop_plot2D	(		_t,
			outdata,
			outdata_filt,
			features,
			filepath = './',
			params = None,
			loop_method = None,
			silent = False
	)

vectorloop_plot3D()

def carputils.ecg.vectorloop_plot3D	(		_t,
			outdata,
			outdata_filt,
			features,
			filepath = './',
			params = None,
			loop_method = None,
			silent = False
	)

Variable Documentation

color

carputils.ecg.color

dpi

carputils.ecg.dpi

edgecolor

carputils.ecg.edgecolor

fopen

carputils.ecg.fopen = open

linestyle

carputils.ecg.linestyle

simplify

carputils.ecg.simplify

transparent

carputils.ecg.transparent

usetex

carputils.ecg.usetex