carputils.model.generate Namespace Reference

Code to automatically generate model component classes from the openCARP source. More...

Functions
def	wrap (text, linelen=80, pad=0)
	Wrap lines of text. More...
def	param_sort (keys, kappa_first=True)
def	param_iterate (params)
def	write_param_desc (name, default=None)
def	write_class (name, parent, description, modelid=None, plugin=None, shortname=None, params={}, region=True)
def	write_maps (mapping)
def	write_summary (modeltype, modelattr=[])
def	mechanics_materials (elasticity)
def	tension_plugin (name, directory)
def	limpet_read_imps (limpetdir)
def	limpet_params (name, directory)
	Scrub most of the parmeters and default values from the source code. More...
def	ionic_models (limpetdir)
def	active_tension_models (limpetdir)

Variables
string	HEADER
dictionary	NAMEMAP
dictionary	DESCRIPTION_NAMEMAP
dictionary	PARAM_TYPES
dictionary	PARAM_DESC
	parser = argparse.ArgumentParser()
	help
	args = parser.parse_args()
	model_dir = os.path.dirname(__file__)
	carp_source_abspath = os.path.abspath(args.carp_source)
	elasticity = os.path.join(carp_source_abspath, 'physics', 'elasticity')
	limpet = os.path.join(carp_source_abspath, 'physics/limpet')

Detailed Description

Code to automatically generate model component classes from the openCARP source.

Function Documentation

active_tension_models()

def carputils.model.generate.active_tension_models

(

limpetdir

)

ionic_models()

def carputils.model.generate.ionic_models

(

limpetdir

)

limpet_params()

def carputils.model.generate.limpet_params	(		name,
			directory
	)

Scrub most of the parmeters and default values from the source code.

limpet_read_imps()

def carputils.model.generate.limpet_read_imps

(

limpetdir

)

mechanics_materials()

def carputils.model.generate.mechanics_materials

(

elasticity

)

param_iterate()

def carputils.model.generate.param_iterate

(

params

)

param_sort()

def carputils.model.generate.param_sort	(		keys,
			kappa_first = True
	)

tension_plugin()

def carputils.model.generate.tension_plugin	(		name,
			directory
	)

wrap()

def carputils.model.generate.wrap	(		text,
			linelen = 80,
			pad = 0
	)

Wrap lines of text.

write_class()

def carputils.model.generate.write_class	(		name,
			parent,
			description,
			modelid = None,
			plugin = None,
			shortname = None,
			params = {},
			region = True
	)

write_maps()

def carputils.model.generate.write_maps

(

mapping

)

write_param_desc()

def carputils.model.generate.write_param_desc	(		name,
			default = None
	)

write_summary()

def carputils.model.generate.write_summary	(		modeltype,
			modelattr = []
	)

Variable Documentation

args

carputils.model.generate.args = parser.parse_args()

carp_source_abspath

carputils.model.generate.carp_source_abspath = os.path.abspath(args.carp_source)

DESCRIPTION_NAMEMAP

dictionary carputils.model.generate.DESCRIPTION_NAMEMAP

Initial value:

=  {'Neohooke':   'neo-Hookean',
                       'NHSstress':  'Niederer-Hunter-Smith',
                       'NPStress':   'Nash-Panfilov',
                       'Muscon':     'Hunter-McCulloch-ter Keurs',
                       'LandStress': 'Land'}

elasticity

carputils.model.generate.elasticity = os.path.join(carp_source_abspath, 'physics', 'elasticity')

HEADER

string carputils.model.generate.HEADER

Initial value:

=  "\
#\n\
# This file was auto-generated by generate.py\n\
# do not edit, manual changes might get lost.\n\
#\n\
# This file is part of openCARP\n\
# (see https://www.openCARP.org).\n\
#\n\
# The openCARP project licenses this file to you under the\n\
# Apache License, Version 2.0 (the \"License\");\n\
# you may not use this file except in compliance\n\
# with the License.  You may obtain a copy of the License at\n\
#\n\
#   http://www.apache.org/licenses/LICENSE-2.0\n\
#\n\
# Unless required by applicable law or agreed to in writing,\n\
# software distributed under the License is distributed on an\n\
# \"AS IS\" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY\n\
# KIND, either express or implied.  See the License for the\n\
# specific language governing permissions and limitations\n\
# under the License.\n\
#\n"

help

carputils.model.generate.help

limpet

carputils.model.generate.limpet = os.path.join(carp_source_abspath, 'physics/limpet')

model_dir

carputils.model.generate.model_dir = os.path.dirname(__file__)

NAMEMAP

dictionary carputils.model.generate.NAMEMAP

Initial value:

=  {'Neohooke':        'NeoHookean',
           'StVK':            'StVenantKirchhoff',
           'Artery':          'HolzapfelArterial',
           'Myocardium':      'HolzapfelOgden',
           'NHSstress':       'NHS',
           'LandStress':      'Land',
           'LandHumanStress': 'LandHuman',
           'FxStress':        'Fx',
           'TanhStress':      'Tanh',
           'NPStress':        'NP'}

PARAM_DESC

dictionary carputils.model.generate.PARAM_DESC

Initial value:

=  {'name': 'The name of the model material region',
              'IDs':  'The material tags to be included in this IMP region',
              'kappa': 'Value of the incompressibility penalty'}

PARAM_TYPES

dictionary carputils.model.generate.PARAM_TYPES

Initial value:

=  {'name': 'str',
               'IDs':  'list of int'}

parser

carputils.model.generate.parser = argparse.ArgumentParser()