carputils.model.helper_methods Namespace Reference

Functions
def	create_dir (directory)
	Creates a directory for the defined path and checks for errors. More...
def	extract_last_ms_from_igb (job, nodes_to_check_str, simid, last_ms, igb_file='/vm.igb', out_file="/out")
	Uses igbextract to extract nodes from an igb file. More...
def	get_cmd_for_one_stimulus (args, start, stimulation_node, duration=2, npls=1, bcl=None)
	Initializes a cmd prompt to create a stimulus for a given startpoint and duration at a given stimulation node. More...
def	get_valid_lat_by_path (lat_path, lat_start, lat_end=None)
def	get_last_lat_for_one_pt (lat_path, point_idx)
def	write_ids_to_dat (filename, ids, values, max_id, nan_value=-1)
def	write_to_dat (filename, data)

Function Documentation

create_dir()

def carputils.model.helper_methods.create_dir

(

directory

)

Creates a directory for the defined path and checks for errors.

Parameters

directory

:return:

extract_last_ms_from_igb()

def carputils.model.helper_methods.extract_last_ms_from_igb	(		job,
			nodes_to_check_str,
			simid,
			last_ms,
			igb_file = '/vm.igb',
			out_file = "/out"
	)

Uses igbextract to extract nodes from an igb file.

Parameters

job	Job object to execute commands.
nodes_to_check_str
simid	The current working directory for the simulation.
last_ms	Sets the start to the last x ms.
igb_file	IGB input file. Ends with .igb.
out_file	Output file from the extraction. :return:

get_cmd_for_one_stimulus()

def carputils.model.helper_methods.get_cmd_for_one_stimulus	(		args,
			start,
			stimulation_node,
			duration = 2,
			npls = 1,
			bcl = None
	)

Initializes a cmd prompt to create a stimulus for a given startpoint and duration at a given stimulation node.

Parameters

args	Has to contain the stimulus strength (args.strength) in mV and stimulation size (args.size)
start	Start time of the stimulus
stimulation_node	3D coordinates of the stimulation node
duration	Duration of the stimulus in ms
npls	Number of pulses per stimulus
bcl	Basic cycle length in ms. If not set the default in openCARP is (t_end-start) :return:

get_last_lat_for_one_pt()

def carputils.model.helper_methods.get_last_lat_for_one_pt	(		lat_path,
			point_idx
	)

get_valid_lat_by_path()

def carputils.model.helper_methods.get_valid_lat_by_path	(		lat_path,
			lat_start,
			lat_end = None
	)

write_ids_to_dat()

def carputils.model.helper_methods.write_ids_to_dat	(		filename,
			ids,
			values,
			max_id,
			nan_value = -1
	)

write_to_dat()

def carputils.model.helper_methods.write_to_dat	(		filename,
			data
	)