#include <stdlib.h>
#include <stdio.h>
#include <unistd.h>
#include <iostream>
#include "IGBheader.h"
#include <assert.h>
#include "ops_cmdline.h"
#include <vector>
#include "muParser.h"

Include dependency graph for IGBops.cc:

Classes
class	Interp
	Interpolate class. More...

Macros
#define	data_t float

Enumerations
enum	Data_file_t { NONE =0 , SPACE_TIME =5 , SPACE =4 , PT_TIME =3 , PT =2 , TIME =1 }

Functions
void	output_scratch (data_t s, FILE out, int n, bool bin)

void	output_scratch (vector< data_t > &s, FILE *out, bool bin)

bool	overlap (IGBheader first, IGBheader second)

void	joinXY (IGBheader h1, IGBheader h2, IGBheader *hout)

void	join_space (data_t x, int nx, data_t y, int ny, FILE *out)

void	eval_expr (data_t x, int n, char expr, FILE out, data_t result)

template<class T >
void	eval_expr (data_t x0, T x1, int n, char expr, FILE out, int nc=0)

void	center_diff (data_t x, int slsz, vector< data_t > &odat, int t, float dt, FILE out)

void	forward_diff (data_t x, int slsz, vector< data_t > &old, int t, float dt, FILE out)

void	aXPLUS_bY (data_t x, data_t y, data_t a, data_t b, int slsz, int nc, FILE *out)

template<class T >
void	aXPLUS_bY (data_t x, T y, data_t a, data_t b, int slsz, FILE *out)

void	avgXt (data_t x, int slsz, int nc, float t, FILE out)

void	avgXi (data_t *x, vector< data_t > &sum, const data_t fac)

void	varXi (data_t x, data_t mean, vector< data_t > &sum, const data_t fac)

void	aXPLUS_b (data_t x, data_t a, data_t b, int slsz, FILE out)

void	XdivY (data_t x, data_t y, int slsz, FILE *out)

void	XdivY (data_t x, data_t y, int slsz, int nc, FILE *out)

void	XmulY (data_t x, data_t y, int slsz, FILE *out)

void	XmulY (data_t x, data_t y, int slsz, int nc, FILE *out)

void	minXt (data_t x, int slsz, int nc, float t, FILE out)

void	t_maxX (data_t x, data_t mx, data_t *tm, size_t n, float t)

void	maxXi (data_t x, data_t mx, size_t n)

void	minXi (data_t x, data_t mn, size_t n)

void	maxXt (data_t x, int slsz, int nc, float t, FILE out)

void	XPLUS_a (data_t x, data_t a, int slsz, FILE out)

void	Xbox (data_t dat, int x, int y, FILE out, int d, int nc)

void	sclip_ab (data_t dat, int sz, data_t upper, data_t lower, vector< data_t > &scr, int t, int tfinal, FILE out)

void	magnitude (data_t x, int n, int nc, FILE out)
	determine magnitude at each point More...

void	dot (data_t x, data_t y, int n, int nc, FILE *out, bool pt)
	perform dot product More...

template<class T >
void	simp38 (T x, int n, int t, data_t runInt, float dt)
	Simpson's 3/8 rule. More...

template<class T >
void	midpt (T x, int n, bool end, data_t reduce, float dt)

void	interpolate (data_t dat, vector< int > &idx, vector< float * > &w, int n, FILE *out)
	interpolate within points More...

template<class T >
void	normalize (IGBheader h, FILE out, T min, T max)
	normalize pixels over all time More...

void	maxP2P (data_t dat, data_t big, data_t *maxpp, int sz, int t)
	find the maximum peak-to-peak value at each point More...

void	ravgX_ta (data_t dat1, int sz, int t, int a, vector< data_t > &tmp, FILE out)

void	read_vector (vector< data_t > &y, gzFile in, int nc)

std::string	cmdline_str (int n, char *w[])

int	main (int argc, char *argv[])

Variables
const int	MAX_NC =4

int	Tbit =1

int	IGB_DATA_T [5] = { 0, IGB_FLOAT, IGB_COMPLEX, IGB_VEC3_f, IGB_VEC4_f }

Macro Definition Documentation

◆ data_t

#define data_t float

Definition at line 121 of file IGBops.cc.

Enumeration Type Documentation

◆ Data_file_t

enum Data_file_t

Enumerator
NONE
SPACE_TIME
SPACE
PT_TIME
PT
TIME

Definition at line 70 of file IGBops.cc.

Function Documentation

◆ avgXi()

void avgXi	(	data_t *	x,
		vector< data_t > &	sum,
		const data_t	fac
	)

Definition at line 308 of file IGBops.cc.

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◆ avgXt()

void avgXt	(	data_t *	x,
		int	slsz,
		int	nc,
		float	t,
		FILE *	out
	)

Definition at line 293 of file IGBops.cc.

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◆ aXPLUS_b()

void aXPLUS_b	(	data_t *	x,
		data_t	a,
		data_t	b,
		int	slsz,
		FILE *	out
	)

Definition at line 325 of file IGBops.cc.

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◆ aXPLUS_bY() [1/2]

void aXPLUS_bY	(	data_t *	x,
		data_t *	y,
		data_t	a,
		data_t	b,
		int	slsz,
		int	nc,
		FILE *	out
	)

Definition at line 274 of file IGBops.cc.

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◆ aXPLUS_bY() [2/2]

template<class T >

void aXPLUS_bY	(	data_t *	x,
		T *	y,
		data_t	a,
		data_t	b,
		int	slsz,
		FILE *	out
	)

Definition at line 284 of file IGBops.cc.

◆ center_diff()

void center_diff	(	data_t *	x,
		int	slsz,
		vector< data_t > &	odat,
		int	t,
		float	dt,
		FILE *	out
	)

Definition at line 239 of file IGBops.cc.

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◆ cmdline_str()

std::string cmdline_str	(	int	n,
		char *	w[]
	)

return the command line

Parameters

n	argc
w	argv

Definition at line 759 of file IGBops.cc.

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◆ dot()

void dot	(	data_t *	x,
		data_t *	y,
		int	n,
		int	nc,
		FILE *	out,
		bool	pt
	)

perform dot product

Parameters

x	data
y	data
n	total number of data
nc	number of components at each point
pt	true if Y is a single point

Definition at line 550 of file IGBops.cc.

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◆ eval_expr() [1/2]

void eval_expr	(	data_t *	x,
		int	n,
		char *	expr,
		FILE *	out,
		data_t *	result
	)

Definition at line 172 of file IGBops.cc.

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◆ eval_expr() [2/2]

template<class T >

void eval_expr	(	data_t *	x0,
		T *	x1,
		int	n,
		char *	expr,
		FILE *	out,
		int	nc = `0`
	)

Parameters

x0	data 0
x1	data 1
n	number of data points (slice size*num_comp)
expr	expression to evaluate
out	output file
nc	number of components

Definition at line 209 of file IGBops.cc.

◆ forward_diff()

void forward_diff	(	data_t *	x,
		int	slsz,
		vector< data_t > &	old,
		int	t,
		float	dt,
		FILE *	out
	)

Definition at line 261 of file IGBops.cc.

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◆ interpolate()

void interpolate	(	data_t *	dat,
		vector< int * > &	idx,
		vector< float * > &	w,
		int	n,
		FILE *	out
	)

interpolate within points

Parameters

dat	data to interpolate
idx	list of lists of nodes
w	weights for the above nodes
n	number of indices/weights
out	output file

Definition at line 616 of file IGBops.cc.

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◆ join_space()

void join_space	(	data_t *	x,
		int	nx,
		data_t *	y,
		int	ny,
		FILE *	out
	)

Definition at line 164 of file IGBops.cc.

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◆ joinXY()

void joinXY	(	IGBheader *	h1,
		IGBheader *	h2,
		IGBheader *	hout
	)

Definition at line 135 of file IGBops.cc.

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◆ magnitude()

void magnitude	(	data_t *	x,
		int	n,
		int	nc,
		FILE *	out
	)

determine magnitude at each point

Parameters

x	data
n	total number of data
nc	number of components at each point

Definition at line 529 of file IGBops.cc.

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◆ main()

int main	(	int	argc,
		char *	argv[]
	)

Definition at line 771 of file IGBops.cc.

◆ maxP2P()

void maxP2P	(	data_t *	dat,
		data_t *	big,
		data_t *	maxpp,
		int	sz,
		int	t
	)

find the maximum peak-to-peak value at each point

The peak-to-peak amplitude of each montonically increasing or decreasing segment is compared. The big scratch array is divided into 3 sections: the value at the previous time, whether the value was increasing or decreasing, and the value of the last extremum. Extremum are detected when the direction of change reverses. Repeated values are ignored.

Parameters

dat	current data frame
big	scratch data [previous val;direction;extremum]
maxpp	current maximum peak-to-peak
sz	slice size

Definition at line 668 of file IGBops.cc.

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◆ maxXi()

void maxXi	(	data_t *	x,
		data_t *	mx,
		size_t	n
	)

Definition at line 423 of file IGBops.cc.

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◆ maxXt()

void maxXt	(	data_t *	x,
		int	slsz,
		int	nc,
		float	t,
		FILE *	out
	)

Definition at line 445 of file IGBops.cc.

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◆ midpt()

template<class T >

void midpt	(	T *	x,
		int	n,
		bool	end,
		data_t *	reduce,
		float	dt
	)

Midpoint rule

Definition at line 594 of file IGBops.cc.

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◆ minXi()

void minXi	(	data_t *	x,
		data_t *	mn,
		size_t	n
	)

Definition at line 434 of file IGBops.cc.

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◆ minXt()

void minXt	(	data_t *	x,
		int	slsz,
		int	nc,
		float	t,
		FILE *	out
	)

Definition at line 397 of file IGBops.cc.

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◆ normalize()

template<class T >

void normalize	(	IGBheader *	h,
		FILE *	out,
		T *	min,
		T *	max
	)

normalize pixels over all time

Parameters

h	input IGB file
out	output FILE
min	computed pixel minimum
max	computed pixel maximum

Definition at line 637 of file IGBops.cc.

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◆ output_scratch() [1/2]

void output_scratch	(	data_t *	s,
		FILE *	out,
		int	n,
		bool	bin
	)

Definition at line 694 of file IGBops.cc.

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◆ output_scratch() [2/2]

void output_scratch	(	vector< data_t > &	s,
		FILE *	out,
		bool	bin = `false`
	)

Definition at line 705 of file IGBops.cc.

◆ overlap()

bool overlap	(	IGBheader *	first,
		IGBheader *	second
	)

Definition at line 128 of file IGBops.cc.

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◆ ravgX_ta()

void ravgX_ta	(	data_t *	dat1,
		int	sz,
		int	t,
		int	a,
		vector< data_t > &	tmp,
		FILE *	out
	)

Definition at line 718 of file IGBops.cc.

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◆ read_vector()

void read_vector	(	vector< data_t > &	y,
		gzFile	in,
		int	nc
	)

Definition at line 742 of file IGBops.cc.

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◆ sclip_ab()

void sclip_ab	(	data_t *	dat,
		int	sz,
		data_t	upper,
		data_t	lower,
		vector< data_t > &	scr,
		int	t,
		int	tfinal,
		FILE *	out
	)

Definition at line 493 of file IGBops.cc.

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◆ simp38()

template<class T >

void simp38	(	T *	x,
		int	n,
		int	t,
		data_t *	runInt,
		float	dt
	)

Simpson's 3/8 rule.

Parameters

x	data
n	size of data
t	time step (<0 = boundary of interval)
runInt	running integral
dt	size of time step

Definition at line 572 of file IGBops.cc.

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◆ t_maxX()

void t_maxX	(	data_t *	x,
		data_t *	mx,
		data_t *	tm,
		size_t	n,
		float	t
	)

Definition at line 411 of file IGBops.cc.

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◆ varXi()

void varXi	(	data_t *	x,
		data_t *	mean,
		vector< data_t > &	sum,
		const data_t	fac
	)

Definition at line 316 of file IGBops.cc.

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◆ Xbox()

void Xbox	(	data_t *	dat,
		int	x,
		int	y,
		FILE *	out,
		int	d,
		int	nc
	)

Definition at line 469 of file IGBops.cc.

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◆ XdivY() [1/2]

void XdivY	(	data_t *	x,
		data_t *	y,
		int	slsz,
		FILE *	out
	)

Definition at line 334 of file IGBops.cc.

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◆ XdivY() [2/2]

void XdivY	(	data_t *	x,
		data_t *	y,
		int	slsz,
		int	nc,
		FILE *	out
	)

Definition at line 357 of file IGBops.cc.

◆ XmulY() [1/2]

void XmulY	(	data_t *	x,
		data_t *	y,
		int	slsz,
		FILE *	out
	)

Definition at line 379 of file IGBops.cc.

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◆ XmulY() [2/2]

void XmulY	(	data_t *	x,
		data_t *	y,
		int	slsz,
		int	nc,
		FILE *	out
	)

Definition at line 388 of file IGBops.cc.

◆ XPLUS_a()

void XPLUS_a	(	data_t *	x,
		data_t	a,
		int	slsz,
		FILE *	out
	)

Definition at line 458 of file IGBops.cc.

Variable Documentation

◆ IGB_DATA_T

int IGB_DATA_T[5] = { 0, IGB_FLOAT, IGB_COMPLEX, IGB_VEC3_f, IGB_VEC4_f }

Definition at line 122 of file IGBops.cc.

◆ MAX_NC

const int MAX_NC =4

Definition at line 66 of file IGBops.cc.

◆ Tbit

int Tbit =1

Definition at line 71 of file IGBops.cc.

Classes

Macros

Enumerations

Functions

Variables

Macro Definition Documentation

◆ data_t

Enumeration Type Documentation

◆ Data_file_t

Function Documentation

◆ avgXi()

◆ avgXt()

◆ aXPLUS_b()

◆ aXPLUS_bY() [1/2]

◆ aXPLUS_bY() [2/2]

◆ center_diff()

◆ cmdline_str()

◆ dot()

◆ eval_expr() [1/2]

◆ eval_expr() [2/2]

◆ forward_diff()

◆ interpolate()

◆ join_space()

◆ joinXY()

◆ magnitude()

◆ main()

◆ maxP2P()

◆ maxXi()

◆ maxXt()

◆ midpt()

◆ minXi()

◆ minXt()

◆ normalize()

◆ output_scratch() [1/2]

◆ output_scratch() [2/2]

◆ overlap()

◆ ravgX_ta()

◆ read_vector()

◆ sclip_ab()

◆ simp38()

◆ t_maxX()

◆ varXi()

◆ Xbox()

◆ XdivY() [1/2]

◆ XdivY() [2/2]

◆ XmulY() [1/2]

◆ XmulY() [2/2]

◆ XPLUS_a()

Variable Documentation

◆ IGB_DATA_T

◆ MAX_NC

◆ Tbit