opencarp::elliptic_solver Class Reference

#include <electrics.h>

Collaboration diagram for opencarp::elliptic_solver:

Public Member Functions
void	init ()
void	rebuild_matrices (MaterialType *mtype, SF::vector< stimulus > &stimuli, FILE_SPEC logger)
void	rebuild_stiffness (MaterialType *mtype, SF::vector< stimulus > &stimuli, FILE_SPEC logger)
void	rebuild_mass (FILE_SPEC logger)
void	solve (sf_mat &Ki, sf_vec &Vmv, sf_vec &tmp_i)
void	solve_laplace ()
	~elliptic_solver ()

Public Attributes
sf_vec *	phie = nullptr
	phi_e More...
sf_vec *	phie_i = nullptr
	phi_e on intracellular grid More...
sf_vec *	phiesrc = nullptr
	I_e. More...
sf_vec *	currtmp = nullptr
	temp vector for phiesrc More...
sf_mat *	mass_e = nullptr
	mass matrix for RHS elliptic calc More...
sf_mat *	phie_mat = nullptr
	lhs matrix to solve elliptic More...
sf_sol *	lin_solver = nullptr
	petsc or ginkgo lin_solver More...
lin_solver_stats	stats
dbc_manager *	dbc = nullptr
	dbcs require a dbc manager More...
bool	phie_mat_has_nullspace = false
double	tol = 1e-8
	CG stopping tolerance. More...
int	max_it = 100
	maximum number of iterations More...

Detailed Description

Definition at line 40 of file electrics.h.

Constructor & Destructor Documentation

~elliptic_solver()

opencarp::elliptic_solver::~elliptic_solver ( )

inline

Definition at line 72 of file electrics.h.

Member Function Documentation

init()

void opencarp::elliptic_solver::init

(

)

Definition at line 879 of file electrics.cc.

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rebuild_mass()

void opencarp::elliptic_solver::rebuild_mass

(

FILE_SPEC

logger

)

Definition at line 983 of file electrics.cc.

rebuild_matrices()

void opencarp::elliptic_solver::rebuild_matrices	(	MaterialType *	mtype,
		SF::vector< stimulus > &	stimuli,
		FILE_SPEC	logger
	)

Definition at line 912 of file electrics.cc.

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rebuild_stiffness()

void opencarp::elliptic_solver::rebuild_stiffness	(	MaterialType *	mtype,
		SF::vector< stimulus > &	stimuli,
		FILE_SPEC	logger
	)

Definition at line 923 of file electrics.cc.

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solve()

void opencarp::elliptic_solver::solve	(	sf_mat &	Ki,
		sf_vec &	Vmv,
		sf_vec &	tmp_i
	)

Definition at line 1020 of file electrics.cc.

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solve_laplace()

void opencarp::elliptic_solver::solve_laplace

(

)

Definition at line 1056 of file electrics.cc.

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Member Data Documentation

currtmp

sf_vec* opencarp::elliptic_solver::currtmp = nullptr

temp vector for phiesrc

Definition at line 46 of file electrics.h.

dbc

dbc_manager* opencarp::elliptic_solver::dbc = nullptr

dbcs require a dbc manager

Definition at line 58 of file electrics.h.

lin_solver

sf_sol* opencarp::elliptic_solver::lin_solver = nullptr

petsc or ginkgo lin_solver

Definition at line 52 of file electrics.h.

mass_e

sf_mat* opencarp::elliptic_solver::mass_e = nullptr

mass matrix for RHS elliptic calc

Definition at line 48 of file electrics.h.

max_it

int opencarp::elliptic_solver::max_it = 100

maximum number of iterations

Definition at line 63 of file electrics.h.

phie

sf_vec* opencarp::elliptic_solver::phie = nullptr

phi_e

Definition at line 43 of file electrics.h.

phie_i

sf_vec* opencarp::elliptic_solver::phie_i = nullptr

phi_e on intracellular grid

Definition at line 44 of file electrics.h.

phie_mat

sf_mat* opencarp::elliptic_solver::phie_mat = nullptr

lhs matrix to solve elliptic

Definition at line 49 of file electrics.h.

phie_mat_has_nullspace

bool opencarp::elliptic_solver::phie_mat_has_nullspace = false

Definition at line 59 of file electrics.h.

phiesrc

sf_vec* opencarp::elliptic_solver::phiesrc = nullptr

I_e.

Definition at line 45 of file electrics.h.

stats

lin_solver_stats opencarp::elliptic_solver::stats

Definition at line 55 of file electrics.h.

tol

double opencarp::elliptic_solver::tol = 1e-8

CG stopping tolerance.

Definition at line 62 of file electrics.h.

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The documentation for this class was generated from the following files:

• physics/electrics.h
• physics/electrics.cc