The vector class and related algorithms.
Basic utility structs and functions, mostly IO related.
cond_t
description of electrical tissue properties
physMat_t
identifier for physical material properties
description of materal properties in a mesh
SF::vector< RegionSpecs > regions
array with region params
SF::vector< double > el_scale
optionally provided per-element params scale
SF::vector< int > regionIDs
elemental region IDs (multiple tags are grouped in one region)
region based variations of arbitrary material parameters
physMaterial * material
material parameter description
int nsubregs
#subregions forming this region
void * customize
any data for further customization
int * subregtags
FEM tags forming this region.
char * regname
name of region
double clearance
clearance rate (mol/s)
double BathVal[3]
bath diffusion eigenvalues
double basal_conc
basal concentration
double InVal[3]
intracellular diffusion eigenvalues
double ExVal[3]
extracellular diffusion eigenvalues
double ExVal[3]
extracellular conductivity eigenvalues
cond_t g
rule to build conductivity tensor
double InVal[3]
intracellular conductivity eigenvalues
int nAug
number of augmented elements
double BathVal[3]
bath conductivity eigenvalues
int * augment
augmented element list
int mode
0=illumination, 1=emmission
double muAil
absorption coefficient illumination
double muAem
absorption coefficient emmission
double Dem[3]
diffusion coefficient emmission
double Dil[3]
diffusion coefficient illumination
physMat_t material_type
ID of physics material.
double fluct
random fluctuation around standard value