Hello,
For multiple biatria regions I run single_cell_initialization with different region specific variations of Courtemanche model and I saved them to init_values_XX.sv
Later when I run biatria simulations I am trying to load these .sv files to initialize imp_regions. My parameters.par has these settings:
num_imp_regions = 10
imp_region[0].im_sv_init = /Experiments/single_cell_pacing/init_values_RAA.sv
imp_region[1].im_sv_init = /Experiments/single_cell_pacing/init_values_RA.sv
imp_region[2].im_sv_init = /Experiments/single_cell_pacing/init_values_SAN.sv
imp_region[3].im_sv_init = /Experiments/single_cell_pacing/init_values_CT.sv
imp_region[4].im_sv_init = /Experiments/single_cell_pacing/init_values_PM.sv
imp_region[5].im_sv_init = /Experiments/single_cell_pacing/init_values_BB.sv
imp_region[6].im_sv_init = /Experiments/single_cell_pacing/init_values_LA.sv
imp_region[7].im_sv_init = /Experiments/single_cell_pacing/init_values_LAA.sv
imp_region[8].im_sv_init = /Experiments/single_cell_pacing/init_values_CS.sv
imp_region[9].im_sv_init = /Experiments/single_cell_pacing/init_values_Septum.sv
As you see, I don't initialize other imp_region settings like im = Courtemanche or im_param etc, so there is only this what you see above. When I run the simulation I am getting these logs:
*** Initializing physics ***
Initializing Electrics ..
Setting up ionic models and plugins
-----------------------------------
Assigning IMPS to tagged regions:
Ionic model: LuoRudy91 to tag region(s) [0] (implicitely)
Ionic model: LuoRudy91 to tag region(s) [0] (implicitely)
Ionic model: LuoRudy91 to tag region(s) [0] (implicitely)
Ionic model: LuoRudy91 to tag region(s) [0] (implicitely)
Ionic model: LuoRudy91 to tag region(s) [0] (implicitely)
Ionic model: LuoRudy91 to tag region(s) [0] (implicitely)
Ionic model: LuoRudy91 to tag region(s) [0] (implicitely)
Ionic model: LuoRudy91 to tag region(s) [0] (implicitely)
Ionic model: LuoRudy91 to tag region(s) [0] (implicitely)
Ionic model: LuoRudy91 to tag region(s) [0] (implicitely)
read_sv(): Initialization using file: /home/jg23/Experiments/LAvRA/KCL_torso1_l/af/single_cell_pacing_af_bcl_200_2024-08-08_18-47-33/init_values_RAA.sv
L5 : IMPs do not match region (Courtemanche vs LuoRudy91)
read_sv(): Initialization using file: /Experiments/single_cell_pacing/init_values_RA.sv
read_sv(): Initialization using file: /Experiments/single_cell_pacing/init_values_SAN.sv
read_sv(): Initialization using file: /Experiments/single_cell_pacing/init_values_CT.sv
read_sv(): Initialization using file: /Experiments/single_cell_pacing/init_values_PM.sv
read_sv(): Initialization using file: /Experiments/single_cell_pacing/init_values_BB.sv
read_sv(): Initialization using file: /Experiments/single_cell_pacing/init_values_LA.sv
read_sv(): Initialization using file: /Experiments/single_cell_pacing/init_values_LAA.sv
read_sv(): Initialization using file: /Experiments/single_cell_pacing/init_values_CS.sv
read_sv(): Initialization using file: /Experiments/single_cell_pacing/init_values_Septum.sv
My question is... if my init_values.sv files have Courtemanche models saved in them, would they replace initialized by default LuoRudy91? Or do I need to initialize other imp_region settings like im, im_param etc despite loading .sv files?
Thanks Jakub
