carputils
Doxygen code documentation for the python framework controlling openCARP
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carputils.model.ionic.TWorldIonicModel Class Reference

Describes the TWorld ionic model. More...

Inheritance diagram for carputils.model.ionic.TWorldIonicModel:

Static Public Attributes

string SHORTNAME = 'tworld'
 
string MODELID = 'TWorld'
 
dictionary PARAMETERS
 

Detailed Description

Describes the TWorld ionic model.

Parameters

IDs list of int The material tags to be included in this IMP region name str The name of the model material region Aff float, optional Value of Aff, defaults to 0.52477 alpha float, optional Value of alpha, defaults to 0.05 alpha_1 float, optional Value of alpha_1, defaults to 0.154375 alpha_serca float, optional Value of alpha_serca, defaults to 0.05 baseRateCaI float, optional Value of baseRateCaI, defaults to 0.00030232 beta float, optional Value of beta, defaults to 0.00068 beta_0 float, optional Value of beta_0, defaults to 2.3 beta_1 float, optional Value of beta_1, defaults to 0.1911 beta_1_contraction float, optional Value of beta_1_contraction, defaults to -2.4 Bmax_myosin float, optional Value of Bmax_myosin, defaults to 0.14 Bmax_Naj float, optional Value of Bmax_Naj, defaults to 7.561 Bmax_Nasl float, optional Value of Bmax_Nasl, defaults to 1.65 Bmax_SR float, optional Value of Bmax_SR, defaults to 0.01785854 Bmax_TnChigh float, optional Value of Bmax_TnChigh, defaults to 0.14 Bmax_TnClow float, optional Value of Bmax_TnClow, defaults to 0.07 bt float, optional Value of bt, defaults to 12.4767 Cae float, optional Value of Cae, defaults to 1.8 caExpFactor float, optional Value of caExpFactor, defaults to 0.68655 caExpFactor2 float, optional Value of caExpFactor2, defaults to 2.06273 CaMK0 float, optional Value of CaMK0, defaults to 0.1 caTransFactor float, optional Value of caTransFactor, defaults to 0.94428 caTransFactor2 float, optional Value of caTransFactor2, defaults to 0.52967 cellLength float, optional Value of cellLength, defaults to 100.0 cellRadius float, optional Value of cellRadius, defaults to 10.25 celltype float, optional Value of celltype, defaults to 0.0 CI_to_RI float, optional Value of CI_to_RI, defaults to 0.00248 Cle float, optional Value of Cle, defaults to 150.0 Cmem float, optional Value of Cmem, defaults to 1.381e-10 dielConstant float, optional Value of dielConstant, defaults to 74.0 directRelMidpoint float, optional Value of directRelMidpoint, defaults to 0.95271 dr float, optional Value of dr, defaults to 0.25 ec50SR float, optional Value of ec50SR, defaults to 0.75385 ecCaI float, optional Value of ecCaI, defaults to 0.001 F float, optional Value of F, defaults to 96485.0 fICaL_PKA float, optional Value of fICaL_PKA, defaults to 0.0 fIKs_PKA float, optional Value of fIKs_PKA, defaults to 0.0 fINa_PKA float, optional Value of fINa_PKA, defaults to 0.0 fINaK_PKA float, optional Value of fINaK_PKA, defaults to 0.0 Fjunc float, optional Value of Fjunc, defaults to 0.11 fMyBPC_PKA float, optional Value of fMyBPC_PKA, defaults to 0.0 fPLB_PKA float, optional Value of fPLB_PKA, defaults to 0.0 fracTnIpo float, optional Value of fracTnIpo, defaults to 0.0031 fTnI_PKA float, optional Value of fTnI_PKA, defaults to 0.0 gamma float, optional Value of gamma, defaults to 0.0085 gamma_wu float, optional Value of gamma_wu, defaults to 0.615 GCab_b float, optional Value of GCab_b, defaults to 0.000515575 GClb_b float, optional Value of GClb_b, defaults to 0.00241 GClCa_b float, optional Value of GClCa_b, defaults to 0.01615 GK1_b float, optional Value of GK1_b, defaults to 0.6992 GKb_b float, optional Value of GKb_b, defaults to 0.010879 GKr_b float, optional Value of GKr_b, defaults to 0.043 GKs_b float, optional Value of GKs_b, defaults to 2.97002 gKs_factor float, optional Value of gKs_factor, defaults to 0.01 GNa_b float, optional Value of GNa_b, defaults to 22.08788 GNab_b float, optional Value of GNab_b, defaults to 0.000594 GNaL_b float, optional Value of GNaL_b, defaults to 0.04229 Gncx_b float, optional Value of Gncx_b, defaults to 0.00179 hillSRCaP float, optional Value of hillSRCaP, defaults to 1.02809 IbarNaK_b float, optional Value of IbarNaK_b, defaults to 2.10774 IbarSLCaP_b float, optional Value of IbarSLCaP_b, defaults to 0.02064 ICab_multiplier float, optional Value of ICab_multiplier, defaults to 1.0 ICaL_fractionSS float, optional Value of ICaL_fractionSS, defaults to 0.8 ICaLPCa_multiplier float, optional Value of ICaLPCa_multiplier, defaults to 1.0 IClb_multiplier float, optional Value of IClb_multiplier, defaults to 1.0 IClCa_multiplier float, optional Value of IClCa_multiplier, defaults to 1.0 IK1_multiplier float, optional Value of IK1_multiplier, defaults to 1.0 IKb_multiplier float, optional Value of IKb_multiplier, defaults to 1.0 IKr_multiplier float, optional Value of IKr_multiplier, defaults to 1.0 IKs_multiplier float, optional Value of IKs_multiplier, defaults to 1.0 INa_multiplier float, optional Value of INa_multiplier, defaults to 1.0 INab_multiplier float, optional Value of INab_multiplier, defaults to 1.0 INaCa_fractionSS float, optional Value of INaCa_fractionSS, defaults to 0.31 INaCa_multiplier float, optional Value of INaCa_multiplier, defaults to 1.0 INaK_multiplier float, optional Value of INaK_multiplier, defaults to 1.0 INaL_multiplier float, optional Value of INaL_multiplier, defaults to 1.0 IpCa_multiplier float, optional Value of IpCa_multiplier, defaults to 1.0 Itof_multiplier float, optional Value of Itof_multiplier, defaults to 1.0 Itos_multiplier float, optional Value of Itos_multiplier, defaults to 1.0 J_ca_juncsl float, optional Value of J_ca_juncsl, defaults to 3.260674633581688e-13 J_ca_slmyo float, optional Value of J_ca_slmyo, defaults to 1.341273673480337e-11 J_na_juncsl float, optional Value of J_na_juncsl, defaults to 1.83127823220608e-14 J_na_slmyo float, optional Value of J_na_slmyo, defaults to 1.638627922219794e-12 Jrel_multiplier float, optional Value of Jrel_multiplier, defaults to 1.0 Jup_multiplier float, optional Value of Jup_multiplier, defaults to 1.0 k2n float, optional Value of k2n, defaults to 957.85903 K_Phos_CaMK float, optional Value of K_Phos_CaMK, defaults to 0.35 kasymm float, optional Value of kasymm, defaults to 19.4258 kcaoff float, optional Value of kcaoff, defaults to 3853.2 kcaon float, optional Value of kcaon, defaults to 3416400.0 KdClCa float, optional Value of KdClCa, defaults to 0.1 Ke float, optional Value of Ke, defaults to 5.0 kiCa float, optional Value of kiCa, defaults to 0.39871 kim float, optional Value of kim, defaults to 0.04311 Km_CaMK_Ca float, optional Value of Km_CaMK_Ca, defaults to 0.0075 Km_SERCA_Ca float, optional Value of Km_SERCA_Ca, defaults to 0.4 KmCaAct float, optional Value of KmCaAct, defaults to 0.00015 Kmf float, optional Value of Kmf, defaults to 0.00030672 KmKo float, optional Value of KmKo, defaults to 1.5 Kmn float, optional Value of Kmn, defaults to 0.00222 KmNaip float, optional Value of KmNaip, defaults to 11.0 KmNaip_PKA float, optional Value of KmNaip_PKA, defaults to 8.4615 KmPCa float, optional Value of KmPCa, defaults to 0.0005 Kmr float, optional Value of Kmr, defaults to 2.31442 kna1 float, optional Value of kna1, defaults to 11.9712 kna2 float, optional Value of kna2, defaults to 2.76 kna3 float, optional Value of kna3, defaults to 88.767 koCa float, optional Value of koCa, defaults to 23.87221 koff float, optional Value of koff, defaults to 0.07854 koff_cam float, optional Value of koff_cam, defaults to 0.238 koff_csqn float, optional Value of koff_csqn, defaults to 65.0 koff_myoca float, optional Value of koff_myoca, defaults to 0.00046 koff_myomg float, optional Value of koff_myomg, defaults to 5.7e-05 koff_na float, optional Value of koff_na, defaults to 0.001 koff_slh float, optional Value of koff_slh, defaults to 0.03 koff_sll float, optional Value of koff_sll, defaults to 1.3 koff_sr float, optional Value of koff_sr, defaults to 0.06 koff_tnchca float, optional Value of koff_tnchca, defaults to 3.2e-05 koff_tnchmg float, optional Value of koff_tnchmg, defaults to 0.00333 kom float, optional Value of kom, defaults to 0.16219 kon_cam float, optional Value of kon_cam, defaults to 34.0 kon_csqn float, optional Value of kon_csqn, defaults to 100.0 kon_myoca float, optional Value of kon_myoca, defaults to 13.8 kon_myomg float, optional Value of kon_myomg, defaults to 0.0157 kon_na float, optional Value of kon_na, defaults to 0.0001 kon_slh float, optional Value of kon_slh, defaults to 100.0 kon_sll float, optional Value of kon_sll, defaults to 100.0 kon_sr float, optional Value of kon_sr, defaults to 100.0 kon_tnchca float, optional Value of kon_tnchca, defaults to 2.37 kon_tnchmg float, optional Value of kon_tnchmg, defaults to 0.003 ktm_unblock float, optional Value of ktm_unblock, defaults to 0.02626 lambda float, optional Value of lambda, defaults to 1.0 lambda_max float, optional Value of lambda_max, defaults to 1.2 lambda_min float, optional Value of lambda_min, defaults to 0.87 lambda_rate float, optional Value of lambda_rate, defaults to 0.0 Max_Vmax_SERCA_Ca float, optional Value of Max_Vmax_SERCA_Ca, defaults to 1.11142 maxCaI float, optional Value of maxCaI, defaults to 30.13294 MaxSR float, optional Value of MaxSR, defaults to 15.0 mgi float, optional Value of mgi, defaults to 0.5 minCaI float, optional Value of minCaI, defaults to 0.93249 MinSR float, optional Value of MinSR, defaults to 1.0 mu float, optional Value of mu, defaults to 3.94046 Nae float, optional Value of Nae, defaults to 140.0 nperm float, optional Value of nperm, defaults to 2.036 nu float, optional Value of nu, defaults to 10.15996 PCa_b float, optional Value of PCa_b, defaults to 0.00015768 perm50 float, optional Value of perm50, defaults to 0.35 phi float, optional Value of phi, defaults to 2.23 PNaK float, optional Value of PNaK, defaults to 0.01833 Q10SLCaP float, optional Value of Q10SLCaP, defaults to 2.35 Q10SRCaP float, optional Value of Q10SRCaP, defaults to 2.6 qca float, optional Value of qca, defaults to 0.0955 qna float, optional Value of qna, defaults to 0.6718 R float, optional Value of R, defaults to 8314.0 rateRecovery float, optional Value of rateRecovery, defaults to 0.02313 sex float, optional Value of sex, defaults to 0.0 steepnessCaI float, optional Value of steepnessCaI, defaults to 5.93447 steepnessCaSR float, optional Value of steepnessCaSR, defaults to 5.09473 T float, optional Value of T, defaults to 310.0 tau_plb float, optional Value of tau_plb, defaults to 100000.0 tau_ryr float, optional Value of tau_ryr, defaults to 10000.0 tauInact float, optional Value of tauInact, defaults to 64.11202 tauInact2 float, optional Value of tauInact2, defaults to 119.48978 thL float, optional Value of thL, defaults to 145.0 tjca float, optional Value of tjca, defaults to 66.0 TOT_A float, optional Value of TOT_A, defaults to 25.0 Tref float, optional Value of Tref, defaults to 80.0 TRPN_n float, optional Value of TRPN_n, defaults to 1.65 Vmax_SRCaP_b float, optional Value of Vmax_SRCaP_b, defaults to 0.00543 wca float, optional Value of wca, defaults to 51756.0 wfrac float, optional Value of wfrac, defaults to 0.5 Whole_cell_PP1 float, optional Value of Whole_cell_PP1, defaults to 0.13698 wna float, optional Value of wna, defaults to 32978.0 wnaca float, optional Value of wnaca, defaults to 2776.3 zca float, optional Value of zca, defaults to 2.0 zcl float, optional Value of zcl, defaults to -1.0 zk float, optional Value of zk, defaults to 1.0 zna float, optional Value of zna, defaults to 1.0

Member Data Documentation

◆ MODELID

string carputils.model.ionic.TWorldIonicModel.MODELID = 'TWorld'
static

◆ PARAMETERS

dictionary carputils.model.ionic.TWorldIonicModel.PARAMETERS
static

◆ SHORTNAME

string carputils.model.ionic.TWorldIonicModel.SHORTNAME = 'tworld'
static

The documentation for this class was generated from the following file: