bin.j2c Namespace Reference

Translate json dictionaries into carp* command line. More...

Functions
def	argument_parser ()
def	get_mesh (mesh, cohort, case)
def	setup_mesh (mesh_name, split_file=None)
def	active_electrodes (elec_lst, elec)
def	jobID (args)
	Generate name of top level output directory. More...
def	leadfield_lookup (job, args, lfsetup, base_opts, run_num)
	Check whether the leadfields for a given configuration exists and if not, compute them. More...
def	run (args, job)

Variables
string	EXAMPLE_DESCRIPTIVE_NAME = 'Translate json dictionaries into carp* command line'
string	EXAMPLE_AUTHOR = 'Gernot Plank <gernot.plank@medunigraz.at>, ' \
	EXAMPLE_DIR = os.path.dirname(__file__)

Detailed Description

Translate json dictionaries into carp* command line.

Function Documentation

active_electrodes()

def bin.j2c.active_electrodes	(		elec_lst,
			elec
	)

argument_parser()

def bin.j2c.argument_parser

(

)

get_mesh()

def bin.j2c.get_mesh	(		mesh,
			cohort,
			case
	)

jobID()

def bin.j2c.jobID

(

args

)

Generate name of top level output directory.

leadfield_lookup()

def bin.j2c.leadfield_lookup	(		job,
			args,
			lfsetup,
			base_opts,
			run_num
	)

Check whether the leadfields for a given configuration exists and if not, compute them.

Parameters

job module job module object returned from carputils. args parser Argument parser object returned from carputils. lfsetup lfsetup plan object Obect is created during sample.set_configuration or using plan[j2c.LFSETUP] base_opts list array of carp commands k run_num The current run number

Lf_obj object and the new updated lfsetup when computed.

run()

def bin.j2c.run	(		args,
			job
	)

setup_mesh()

def bin.j2c.setup_mesh	(		mesh_name,
			split_file = None
	)

Variable Documentation

EXAMPLE_AUTHOR

string bin.j2c.EXAMPLE_AUTHOR = 'Gernot Plank <gernot.plank@medunigraz.at>, ' \

EXAMPLE_DESCRIPTIVE_NAME

string bin.j2c.EXAMPLE_DESCRIPTIVE_NAME = 'Translate json dictionaries into carp* command line'

EXAMPLE_DIR

bin.j2c.EXAMPLE_DIR = os.path.dirname(__file__)