bin.j2c Namespace Reference

Translate json dictionaries into carp* command line. More...

Functions
def	argument_parser ()
def	get_mesh (mesh, cohort, case)
def	setup_mesh (mesh_name, split_file=None)
def	active_electrodes (elec_lst, elec)
def	jobID (args)
	Generate name of top level output directory. More...
def	leadfield_lookup (job, args, lfsetup, base_opts, run_num)
	Check whether the leadfields for a given configuration exists and if not, compute them. More...
def	run (args, job)

Variables
string	EXAMPLE_DESCRIPTIVE_NAME = 'Translate json dictionaries into carp* command line'
string	EXAMPLE_AUTHOR = 'Gernot Plank <gernot.plank@medunigraz.at>, ' \
	EXAMPLE_DIR = os.path.dirname(__file__)

Detailed Description

Translate json dictionaries into carp* command line.

Function Documentation

active_electrodes()

def bin.j2c.active_electrodes	(		elec_lst,
			elec
	)

argument_parser()

def bin.j2c.argument_parser

(

)

get_mesh()

def bin.j2c.get_mesh	(		mesh,
			cohort,
			case
	)

jobID()

def bin.j2c.jobID

(

args

)

Generate name of top level output directory.

leadfield_lookup()

def bin.j2c.leadfield_lookup	(		job,
			args,
			lfsetup,
			base_opts,
			run_num
	)

Check whether the leadfields for a given configuration exists and if not, compute them.

@par Parameters

job module job module object returned from carputils. args parser Argument parser object returned from carputils. lfsetup lfsetup plan object Obect is created during sample.set_configuration or using plan[j2c.LFSETUP] base_opts list array of carp commands k run_num The current run number

@return

Lf_obj object and the new updated lfsetup when computed.

run()

def bin.j2c.run	(		args,
			job
	)

setup_mesh()

def bin.j2c.setup_mesh	(		mesh_name,
			split_file = None
	)

Variable Documentation

EXAMPLE_AUTHOR

string bin.j2c.EXAMPLE_AUTHOR = 'Gernot Plank <gernot.plank@medunigraz.at>, ' \

EXAMPLE_DESCRIPTIVE_NAME

string bin.j2c.EXAMPLE_DESCRIPTIVE_NAME = 'Translate json dictionaries into carp* command line'

EXAMPLE_DIR

bin.j2c.EXAMPLE_DIR = os.path.dirname(__file__)