carputils
Doxygen code documentation for the python framework controlling openCARP
Namespaces
bin Namespace Reference

Namespaces

 APDrestitution
 Plot APD restitution curve as generated with bench.
 
 bin2h5
 Create a HDF5 repository file for the ionic models in LIMPET.
 
 bsa
 Determine body surface area (BSA) in [m^2] from weight W [kg] and height [cm].
 
 build_pathway
 
 bullseye
 Generate a bullseye plot for given data.
 
 carphelp
 openCARP parameters helper
 
 carptests
 
 cavplot
 Plot pressure and volume traces and PV loops from a cvsys simulation.
 
 closest_hc
 
 cuclean
 Clean the output of openCARP examples in the example repositories using the carptests framework.
 
 cusettings
 Generate or update a carputils settings file.
 
 cusummary
 Print carputils settings summary to the console.
 
 ecgplotter
 Read an igb file containing extracellular potentials recorded for a 12-lead ECG.
 
 ep_init
 Limit cycle experiment.
 
 
 igb_to_vtkhdf
 
 igbPlotter
 Plot data from an igb file.
 
 insert_endo_layer
 
 j2c
 Translate json dictionaries into carp* command line.
 
 klotz
 Determine Klotz curve from (EDV,EDP) pair.
 
 limit_cycle
 
 lut2hdf5
 Convert lookup tables to HDF5, for use in limpetGUI.
 
 meshQstats
 Read in a given mesh and compute mesh quality statistics.
 
 parfile2carputils
 
 plotTrace
 Plot trace files.
 
 restituteCV
 Read in a given mesh and matching activation time data to compute conduction velocity vectors.
 
 strainplotter
 Plot strains from an igb file containing strain data.
 
 surfextract
 Little tool to extract surface data from a given mesh and save them as VTK files.
 
 sv2hdf5
 Convert state variable files to HDF5, for use in limpetGUI.
 
 svgecg2txt
 Converts single ECG trace in Inkscape SVG format to text format.
 
 tissue_calibrate
 Tissue experiment velocity and conductivity tuning.
 
 trfm
 
 tuneCV
 Tune conductivity settings to match prescribed conduction velocities.
 
 tuneCV3
 
 txt2h5
 Create a HDF5 repository file for the ionic models in LIMPET.
 
 txtecg2json
 Read CARDIOPROOF ecg traces (.txt file) and convert them into json format.
 
 update-carp
 
 velocity
 Read in a given mesh and matching activation time data to compute conduction velocity vectors.