bin.limit_cycle Namespace Reference

Prepacing and validation of tissue/organ models. More...

Functions
def	argument_parser ()
def	mesh_ext (rmode)
def	restart (job, meshname, cnf, fncs, elecs, pp_prtcl, args, mode, rmode, restart_chkpt, visual)
def	chkpt_file_ID (prefix, ID, gen_mode, t_chk, bcl)
def	lat_file_ID (prefix, ID, gen_mode, ext)
def	get_mesh (mesh, cohort, caseID)
def	stage_gen_lat_from_args (job, plan, args)
def	stage_prepace_from_args (job, plan, args)
def	check_input (plan, prtcl, pp_arg)
def	jobID (args)
def	run (args, job)

Variables
string	EXAMPLE_DESCRIPTIVE_NAME = 'Prepacing and validation of tissue/organ models'
string	EXAMPLE_AUTHOR = 'Gernot Plank <gernot.plank@medunigraz.at>, ' \
	EXAMPLE_DIR = os.path.dirname(__file__)
string	CLEAN_PATTERN = r'^(\d{4}-)|(imp_)|(tunecv_)'

Detailed Description

Prepacing and validation of tissue/organ models.

Function Documentation

argument_parser()

def bin.limit_cycle.argument_parser

(

)

check_input()

def bin.limit_cycle.check_input	(		plan,
			prtcl,
			pp_arg
	)

chkpt_file_ID()

def bin.limit_cycle.chkpt_file_ID	(		prefix,
			ID,
			gen_mode,
			t_chk,
			bcl
	)

get_mesh()

def bin.limit_cycle.get_mesh	(		mesh,
			cohort,
			caseID
	)

jobID()

def bin.limit_cycle.jobID

(

args

)

lat_file_ID()

def bin.limit_cycle.lat_file_ID	(		prefix,
			ID,
			gen_mode,
			ext
	)

mesh_ext()

def bin.limit_cycle.mesh_ext

(

rmode

)

restart()

def bin.limit_cycle.restart	(		job,
			meshname,
			cnf,
			fncs,
			elecs,
			pp_prtcl,
			args,
			mode,
			rmode,
			restart_chkpt,
			visual
	)

run()

def bin.limit_cycle.run	(		args,
			job
	)

stage_gen_lat_from_args()

def bin.limit_cycle.stage_gen_lat_from_args	(		job,
			plan,
			args
	)

stage_prepace_from_args()

def bin.limit_cycle.stage_prepace_from_args	(		job,
			plan,
			args
	)

Variable Documentation

CLEAN_PATTERN

string bin.limit_cycle.CLEAN_PATTERN = r'^(\d{4}-)|(imp_)|(tunecv_)'

EXAMPLE_AUTHOR

string bin.limit_cycle.EXAMPLE_AUTHOR = 'Gernot Plank <gernot.plank@medunigraz.at>, ' \

EXAMPLE_DESCRIPTIVE_NAME

string bin.limit_cycle.EXAMPLE_DESCRIPTIVE_NAME = 'Prepacing and validation of tissue/organ models'

EXAMPLE_DIR

bin.limit_cycle.EXAMPLE_DIR = os.path.dirname(__file__)