bin.tissue_calibrate Namespace Reference

Tissue experiment velocity and conductivity tuning. More...

Functions
def	argument_parser ()
def	jobID (args)
	Generate name of top level output directory. More...
def	get_matching_names (pattern, name_list)
def	get_funcs_ignored (protected_funcs, func_names, verbose=False)
def	converge_CVs (job, exp, args)
def	extract_CV_dx (cv_tune, extract_all=False)
def	print_CV_dx_table (cv, dx)
def	plot_CV_dx (ax, cv, dx, kwargs)
def	run (args, job)

Variables
string	EXAMPLE_DESCRIPTIVE_NAME = 'Tissue experiment velocity and conductivity tuning'
string	EXAMPLE_AUTHOR = 'Gernot Plank <gernot.plank@medunigraz.at>, ' \
	EXAMPLE_DIR = os.path.dirname(__file__)
string	CLEAN_PATTERN = r'^(\d{4}-)|(imp_)|(tunecv_)'

Detailed Description

Tissue experiment velocity and conductivity tuning.

Function Documentation

argument_parser()

def bin.tissue_calibrate.argument_parser

(

)

converge_CVs()

def bin.tissue_calibrate.converge_CVs	(		job,
			exp,
			args
	)

extract_CV_dx()

def bin.tissue_calibrate.extract_CV_dx	(		cv_tune,
			extract_all = False
	)

get_funcs_ignored()

def bin.tissue_calibrate.get_funcs_ignored	(		protected_funcs,
			func_names,
			verbose = False
	)

get_matching_names()

def bin.tissue_calibrate.get_matching_names	(		pattern,
			name_list
	)

jobID()

def bin.tissue_calibrate.jobID

(

args

)

Generate name of top level output directory.

plot_CV_dx()

def bin.tissue_calibrate.plot_CV_dx	(		ax,
			cv,
			dx,
			kwargs
	)

print_CV_dx_table()

def bin.tissue_calibrate.print_CV_dx_table	(		cv,
			dx
	)

run()

def bin.tissue_calibrate.run	(		args,
			job
	)

Variable Documentation

CLEAN_PATTERN

string bin.tissue_calibrate.CLEAN_PATTERN = r'^(\d{4}-)|(imp_)|(tunecv_)'

EXAMPLE_AUTHOR

string bin.tissue_calibrate.EXAMPLE_AUTHOR = 'Gernot Plank <gernot.plank@medunigraz.at>, ' \

EXAMPLE_DESCRIPTIVE_NAME

string bin.tissue_calibrate.EXAMPLE_DESCRIPTIVE_NAME = 'Tissue experiment velocity and conductivity tuning'

EXAMPLE_DIR

bin.tissue_calibrate.EXAMPLE_DIR = os.path.dirname(__file__)