Define multiple ionic models to be used in different regions. More...

#include <ctime>
#include <cstdarg>
#include <cstddef>
#include <string>
#include <sys/resource.h>
#include "ION_IF.h"
#include "timer_utils.h"
#include "fem_types.h"
#include "sf_interface.h"

Include dependency graph for MULTI_ION_IF.h:

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Go to the source code of this file.

Classes
struct	limpet::SV_DUMP
	data structure to manage state variable file dumps More...

struct	limpet::Trace_Info
	data structure to manage trace dumps. Should eventually be combined with the state variable dumps, but I'm keeping it separate for now for my own sanity. More...

class	limpet::MULTI_IF

Namespaces
	limpet

Macros
#define	FARADAY 96485
	Faraday's constant. More...

#define	USED_DAT(I, F) ( (I)->get_reqdat()&F \|\| (I)->get_moddat()&F)

#define	get_plug_params(M, R, P) (P ## _Params )get_IIF_plugparam((M.IIF[R]), P ## _ID)

#define	SVD_add(I, R, T, M)

Typedefs
typedef double	limpet::Real

Functions
void	limpet::doppel_MIIF (MULTI_IF orig, MULTI_IF miif_doppel)

void	limpet::doppel_update (MULTI_IF orig, MULTI_IF miif_doppel)

void	limpet::free_doppel (MULTI_IF *m)

void	limpet::dup_IMP_node_state (IonIfBase &IF, int from, int to, GlobalData_t **localdata)

void *	limpet::get_IIF_plugparam (IonIfBase &, int)

int	limpet::get_plug_flag (char plgstr, int out_num_plugins, IonTypeList &out_plugins)

int	limpet::IMPdataLabel2Index (const char *sv)

char *	limpet::tokstr_r (char s1, const char s2, char **lasts)

void	limpet::open_trace (MULTI_IF MIIF, int n_traceNodes, int traceNodes, int label, opencarp::sf_mesh imesh)
	Set up ionic model traces at some global node numbers. More...

void	limpet::dump_trace (MULTI_IF *MIIF, limpet::Real time)

Detailed Description

Define multiple ionic models to be used in different regions.

Author: Edward Vigmond

Version

Date: 2019-10-25

Definition in file MULTI_ION_IF.h.

Macro Definition Documentation

◆ FARADAY

#define FARADAY 96485

Faraday's constant.

Definition at line 147 of file MULTI_ION_IF.h.

◆ get_plug_params

#define get_plug_params	(	M,
		R,
		P
	)	(P ## _Params )get_IIF_plugparam((M.IIF[R]), P ## _ID)

get the parameter structure for a plug-in

This is a wrapper for get_IIF_plugparam() that casts the void pointer to the proper type

Parameters

M	MIIF
R	integer specifying region
P	plug-in

Returns: pointer to parameter structure cast to proper type

Definition at line 314 of file MULTI_ION_IF.h.

◆ SVD_add

#define SVD_add	(	I,
		R,
		T,
		M
	)

Value:

                                                                         {T ## _state *sv; int dtype = 0; sv_dump_add(&I, R,                                          \
                                                                         T ## _ID, offsetof(T ## _state,                 \
                                                                                            M),                          \
                                                                         sizeof(sv->M), dtype, # R "." # T "." # M, # T, \
                                                                         # R); }

add a variable to the list of state variables to be dumped

This is a fancy wrapper for sv_dump_add()

Parameters

I	MIIF
R	integer region identifier
T	IMP name
M	member name

Definition at line 326 of file MULTI_ION_IF.h.

◆ USED_DAT

#define USED_DAT	(	I,
		F
	)	( (I)->get_reqdat()&F \|\| (I)->get_moddat()&F)

test if a global data vector is used

\param I IMP \param F flag

Definition at line 301 of file MULTI_ION_IF.h.

Classes

Namespaces

Macros