Dear Aurel,
here is the error that I get now
-bash-4.2$ ./run.py --EP TT2 --duration 5000 --bcl 500 --ID exp01 --visualize --vis_var ICaL INa IK1
Traceback (most recent call last):
File "./run.py", line 557, in <module>
run()
File "/home/users/simone.scacchi/iSCAR/openCARP/external/carputils/carputils/tools.py", line 465, in wrapped
print(settings.summary)
File "/home/users/simone.scacchi/iSCAR/openCARP/external/carputils/carputils/settings/settings.py", line 94, in summary
return summary(self.config, self.execs, self.solver(), self.cli)
File "/home/users/simone.scacchi/iSCAR/openCARP/external/carputils/carputils/settings/summary.py", line 42, in summary
if value is not nf(value):
File "/home/users/simone.scacchi/iSCAR/openCARP/external/carputils/carputils/settings/summary.py", line 40, in <lambda>
nf = lambda s: '< NOT FOUND >' if s is None or not s.exists() else s
File "/home/users/simone.scacchi/iSCAR/openCARP/external/carputils/carputils/settings/paths.py", line 37, in exists
return os.path.exists(str(self))
File "/home/users/simone.scacchi/iSCAR/openCARP/external/carputils/carputils/settings/paths.py", line 43, in __str__
return os.path.join(*self._parts)
File "/gpfs/software/Python_Intel/2020_up4/intelpython3/lib/python3.7/posixpath.py", line 80, in join
a = os.fspath(a)
TypeError: expected str, bytes or os.PathLike object, not NoneType
I send you also below the file setting.yaml
Thanks.
Ciao,
Simone
# openCARP executables directory
# Specify as many alternative directories as you like, and use the key (e.g.
# 'CPU'/'GPU') with the --build flag on the command line to select which one
# to run with. Whether the build uses GPU or not is determined automatically.
CARP_EXE_DIR:
CPU: /home/users/simone.scacchi/iSCAR/openCARP/_build/bin
# Other paths
#MESHALYZER_DIR: /home/users/simone.scacchi/software/meshalyzer
#LIMPETGUI_DIR: /home/users/simone.scacchi/software/limpetgui
#MESH_DIR: /home/users/simone.scacchi/software/meshes
#MESHTOOL_DIR: /home/users/simone.scacchi/software/bin
# Execution settings and configuration defaults
# Some of these can be overridden on the command line
MPIEXEC: mpiexec # Affects desktop only
SILENT: No # choose Yes or No
VISUALIZE: No # visualization default (Yes, No)
FLAVOR: petsc # choose petsc, direct or pt
DIRECT_SOLVER: MUMPS # choose MUMPS, SUPERLU_DIST or PASTIX
PURK_SOLVER: GMRES # choose GMRES, MUMPS, SUPERLU_DIST or PASTIX
PLATFORM: desktop # choose default hardware profile
BUILD: CPU # choose default CARP build (CPU, GPU)
# Regression testing settings
# The path to a directory containing the reference solution repositories
# (required):
REGRESSION_REF: /home/users/simone.scacchi/iSCAR/openCARP/external/experiments/regression-references
# Default packages to run tests from (can use the Python subpackage notation
# to select specific submodules, e.g. devtests.mechanics):
REGRESSION_PKG: []
# Examples
# - devtests
# - benchmarks
# - devtests.mechanics # Would cause duplication with full devtests above
# Uncomment the following line to control the location of temporary
# files generated by the regression testing framework. By default, temporary
# files are generated in your system /tmp
REGRESSION_TEMP: /home/users/simone.scacchi/iSCAR/openCARP/external/experiments/temp
# Uncomment to limit resources
# MAX_NP: 16 # set maximum number of processes
# Personal information
#EMAIL: you@example.com # Email for notifications
