Tissue level electrics, main Electrics physics class. More...

#include "physics_types.h"
#include "sim_utils.h"
#include "stimulate.h"
#include "sf_interface.h"
#include "timers.h"
#include "ionics.h"

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Classes
class	opencarp::elliptic_solver

class	opencarp::parabolic_solver

struct	opencarp::Activation
	event detection data structures More...

struct	opencarp::Sentinel
	sentinel for checking activity in the tissue More...

class	opencarp::LAT_detector

struct	opencarp::phie_recovery_data

class	opencarp::Electrics

class	opencarp::Laplace

Namespaces
	opencarp

Macros
#define	DUMP_NONE 0

#define	DUMP_IC 1

#define	DUMP_IVOL 2

#define	DUMP_IACT 4

Enumerations
enum	opencarp::PotType { opencarp::VM , opencarp::PHIE }

enum	opencarp::ActMethod { opencarp::NONE , opencarp::ACT_THRESH , opencarp::ACT_DT }

Functions
void	opencarp::set_elec_tissue_properties (MaterialType *mtype, Electrics::grid_t g, FILE_SPEC logger)
	Fill the RegionSpec of an electrics grid with the associated inputs from the param parameters. More...

bool	opencarp::have_dbc_stims (const SF::vector< stimulus > &stimuli)
	return wheter any stimuli require dirichlet boundary conditions More...

int	opencarp::stimidx_from_timeridx (const SF::vector< stimulus > &stimuli, const int timer_id)
	determine link between timer and stimulus More...

void	opencarp::setup_phie_recovery_data (phie_recovery_data &data)

void	opencarp::recover_phie_std (sf_vec &vm, phie_recovery_data &rcv)

int	opencarp::postproc_recover_phie ()

void	opencarp::constant_total_stimulus_current (SF::vector< stimulus > &simuli, sf_mat &mass_i, sf_mat &mass_e, limpet::MULTI_IF *miif, FILE_SPEC logger)
	Scales stimulus current to maintain constant total current across affected regions. More...

void	opencarp::balance_electrode (SF::vector< stimulus > &stimuli, int balance_from, int balance_to)
	Balance two electrodes for current or voltage-based stimulation. More...

void	opencarp::apply_stim_to_vector (const stimulus &s, sf_vec &vec, bool add)

void	opencarp::set_cond_type (MaterialType &m, cond_t type)

const char *	opencarp::get_tsav_ext (double time)

void	opencarp::setup_dataout (const int dataout, std::string dataout_vtx, mesh_t grid, SF::vector< mesh_int_t > *&restr, bool async)

void	opencarp::compute_restr_idx_async (sf_mesh &mesh, SF::vector< mesh_int_t > &inp_idx, SF::vector< mesh_int_t > &idx)

void	opencarp::compute_restr_idx (sf_mesh &mesh, SF::vector< mesh_int_t > &inp_idx, SF::vector< mesh_int_t > &idx)

Detailed Description

Tissue level electrics, main Electrics physics class.

Author: Aurel Neic, Gernot Plank, Edward Vigmond

Version

Date: 2019-10-25

Definition in file electrics.h.

Macro Definition Documentation

◆ DUMP_IACT

#define DUMP_IACT 4

Definition at line 41 of file electrics.h.

◆ DUMP_IC

#define DUMP_IC 1

Definition at line 39 of file electrics.h.

◆ DUMP_IVOL

#define DUMP_IVOL 2

Definition at line 40 of file electrics.h.

◆ DUMP_NONE

#define DUMP_NONE 0

Definition at line 38 of file electrics.h.

Classes

Namespaces

Macros