electrics.h File Reference

Tissue level electrics, main Electrics physics class. More...

#include "physics_types.h"
#include "sim_utils.h"
#include "stimulate.h"
#include "sf_interface.h"
#include "timers.h"
#include "ionics.h"

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Classes
class	opencarp::elliptic_solver
class	opencarp::parabolic_solver
struct	opencarp::Activation
	event detection data structures More...
struct	opencarp::Sentinel
	sentinel for checking activity in the tissue More...
class	opencarp::LAT_detector
struct	opencarp::phie_recovery_data
class	opencarp::Electrics
class	opencarp::Laplace

Namespaces
	opencarp

Enumerations
enum	opencarp::PotType { opencarp::VM, opencarp::PHIE }
enum	opencarp::ActMethod { opencarp::NONE, opencarp::ACT_THRESH, opencarp::ACT_DT }

Functions
void	opencarp::set_elec_tissue_properties (MaterialType *mtype, Electrics::grid_t g, FILE_SPEC logger)
	Fill the RegionSpec of an electrics grid with the associated inputs from the param parameters. More...
bool	opencarp::have_dbc_stims (const SF::vector< stimulus > &stimuli)
	return wheter any stimuli require dirichlet boundary conditions More...
int	opencarp::stimidx_from_timeridx (const SF::vector< stimulus > &stimuli, const int timer_id)
	determine link between timer and stimulus More...
void	opencarp::setup_phie_recovery_data (phie_recovery_data &data)
void	opencarp::recover_phie_std (sf_vec &vm, phie_recovery_data &rcv)
int	opencarp::postproc_recover_phie ()
void	opencarp::constant_total_stimulus_current (SF::vector< stimulus > &stimuli, sf_mat &mass_i, sf_mat &mass_e, limpet::MULTI_IF *miif, FILE_SPEC logger)
void	opencarp::balance_electrode (SF::vector< stimulus > &stimuli, int balance_from, int balance_to)
void	opencarp::apply_stim_to_vector (const stimulus &s, sf_vec &vec, bool add)
void	opencarp::set_cond_type (MaterialType &m, cond_t type)

Detailed Description

Tissue level electrics, main Electrics physics class.

Author

Aurel Neic, Gernot Plank, Edward Vigmond

Version

Date

2019-10-25

Definition in file electrics.h.