Converting CellML

Question

Please I used the cellml_converter.py module to convert a cellml model to easyml format. Warnings raised by the cellml converter were addressed. I then utilized make_dynamic_model.sh script to create the .h, .c, and .so files for the .model file. I tried running the new model in bench but it keeps throwing the exception below. 

"error while loading shared libraries: libmpifort.so.12: cannot open shared object file: No such file or directory" The path for the .so is correct in my case.

Below is the link to the cellml model I am trying to modify:

https://models.cellml.org/e/5f0/ModTrovato2020.cellml/view

NB. I have modified existing models in opencarp repository, tried the same steps as I mentioned earlier and works fine.

Answer 1

Hi,

Are you running the simulation in the same computer where you compiled the dynamic model?

Cheers,

Jorge

Comments

Yes. I did the compilation on a cluster and I tried performing single cell simulation in bench afterwards

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Hi,

From the error that you posted it looks like the path to the library is not found. If you are compiling and running in the same this issue must be related to another problem. Could you please provide us more information?

Best,

Jorge