File List

Here is a list of all files with brief descriptions:

[detail level 1234]

▼ fem
▼ slimfem
► src
asciiPlotter.hpp	Class used to plot functions on the terminal
dense_mat.hpp	Dense matrix class and associated funcs
hashmap.hpp	Classes similar to unordered_set and unordered_map, but with better performance
kdpart.hpp	Kdtree based partitioning classes
progress.hpp	CLI progress class
SF_abstract_lin_solver.h
SF_abstract_matrix.h
SF_abstract_vector.h
SF_base.h	The base header file
SF_container.h	Basic containers
SF_fem_utils.h	FEM utilities
SF_globals.h
SF_io_base.h
SF_linalg_utils.h	Sequential linear algebra kernels
SF_mesh_io.h	Functions related to mesh IO
SF_mesh_utils.h	Functions handling a distributed mesh
SF_network.h	Functions related to network communication
SF_numbering.h	Classes related to mesh node renumbering
SF_parallel_layout.h	Classes and algorithms related to the layout of distributed meshes
SF_parallel_utils.h	Simple utility functions for parallel data
SF_partitioning.h	Partitioning classes
SF_sort.h	Various sorting algorithms
SF_vector.h	The vector class and related algorithms
fem.h	Top-level header of FEM module
fem_types.h	Structs and types for (electric) FEM
fem_utils.cc	FEM utilities functions
fem_utils.h	FEM utilities functions
sf_interface.cc	Interface to SlimFem
sf_interface.h	Interface to SlimFem
▼ numerics
basics.cc	Basic utility functions, mostly IO related
basics.h	Basic utility structs and functions, mostly IO related
IGBheader.cc
IGBheader.h
numerics.h	Top-level header file of numerics module
SF_init.h
short_float.cc
short_float.h
signals.h	Manage time signals used for stimulation and other time-dependent boundary conditions
timer_utils.cc	Timers and timer manager
timer_utils.h	Timers and timer manager
timers.cc
timers.h
vect.h	3D vector algebra
▼ physics
▼ limpet
► src
ap_analyzer.cc
ap_analyzer.h
bench.cc	Performance measurements of IMP models
bench_utils.cc
bench_utils.h
cexcept.h
clamp.cc
clamp.h
help.cc
ION_IF.cc	Specify an interface for an IMP
ION_IF.h
ion_type.cc
ion_type.h
limpet_data.h
limpet_types.h
LUT.cc
LUT.h
MULTI_ION_IF.cc	Define multiple ionic models to be used in different regions
MULTI_ION_IF.h	Define multiple ionic models to be used in different regions
ODEint.cc
ODEint.h
restitute.cc
restitute.h
Rosenbrock.cc
Rosenbrock.h
stretch.cc
stretch.h
sv_init.h
target.cc
target.h	Defines valid targets for an ionic model to run on and an allocator for allocating memory on a specific target
trace.cc
trace.h
electric_integrators.cc	FEM integrators fo electrics
electric_integrators.h
electrics.cc	Tissue level electrics, main Electrics physics class
electrics.h	Tissue level electrics, main Electrics physics class
ionics.cc	Electrical ionics functions and LIMPET wrappers
ionics.h	Electrical ionics functions and LIMPET wrappers
physics.h	Top-level header of physics module
physics_types.h	Basic physics types
stimulate.cc	Electrical stimulation functions
stimulate.h	Electrical stimulation functions
test_ginkgo.cpp
▼ simulator
async_io.cc	Async IO functions
async_io.h	Async IO functions
build_info.py
main.cc	OpenCARP main function
sim_utils.cc	Simulator-level utility execution control functions
sim_utils.h	Simulator-level utility execution control functions
simulator.h
testfem.cc	OpenCARP main function
▼ tools
▼ igbutils
Filter.cc
Filter.h
IGBapd.cc
IGBdft.cc
IGBextract.cc
igbhead.cc
IGBheader.cc
IGBheader.h
IGBops.cc
iir.c
iir.h
short_float.cc
short_float.h
▼ mesher
mesher.cc