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carputils
Doxygen code documentation for the python framework controlling openCARP
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| ▼Nbin | |
| NAPDrestitution | Plot APD restitution curve as generated with bench |
| Nbin2h5 | Create a HDF5 repository file for the ionic models in LIMPET |
| Nbsa | Determine body surface area (BSA) in [m^2] from weight W [kg] and height [cm] |
| Nbuild_pathway | |
| Nbullseye | Generate a bullseye plot for given data |
| Ncarphelp | OpenCARP parameters helper |
| Ncarptests | |
| Ncavplot | |
| Nclosest_hc | |
| Ncuclean | Clean the output of openCARP examples in the example repositories using the carptests framework |
| Ncusettings | Generate or update a carputils settings file |
| Ncusummary | Print carputils settings summary to the console |
| Necgplotter | Read an igb file containing extracellular potentials recorded for a 12-lead ECG |
| Nep_init | Limit cycle experiment |
| NgenerateMetadata | |
| Nigb_to_vtkhdf | |
| NigbPlotter | Plot data from an igb file |
| Ninsert_endo_layer | |
| Nj2c | Translate json dictionaries into carp* command line |
| Nklotz | Determine Klotz curve from (EDV,EDP) pair |
| Nlimit_cycle | |
| Nlut2hdf5 | Convert lookup tables to HDF5, for use in limpetGUI |
| NmeshQstats | Read in a given mesh and compute mesh quality statistics |
| Nparfile2carputils | |
| NplotTrace | Plot trace files |
| NrestituteCV | Read in a given mesh and matching activation time data to compute conduction velocity vectors |
| Nstrainplotter | Plot strains from an igb file containing strain data |
| Nsurfextract | Little tool to extract surface data from a given mesh and save them as VTK files |
| Nsv2hdf5 | Convert state variable files to HDF5, for use in limpetGUI |
| Nsvgecg2txt | Converts single ECG trace in Inkscape SVG format to text format |
| Ntissue_calibrate | Tissue experiment velocity and conductivity tuning |
| Ntrfm | |
| NtuneCV | Tune conductivity settings to match prescribed conduction velocities |
| NtuneCV3 | |
| Ntxt2h5 | Create a HDF5 repository file for the ionic models in LIMPET |
| Ntxtecg2json | Read CARDIOPROOF ecg traces (.txt file) and convert them into json format |
| Nupdate-carp | |
| Nvelocity | Read in a given mesh and matching activation time data to compute conduction velocity vectors |
| ▼Ncarputils | |
| Nbench | Some tools for interfacing with the bench executable |
| ►Nbullseye | Bullseye plot generation |
| ►Nbundle | This module implements the bundle feature, which allows to easily share carputils experiments |
| ►Ncarpio | Each module in this package defines a class for reading and writing a specific data type |
| Ncext | |
| Nclean | Functions for cleaning directories and manage overwrite behavior |
| Ncli | Some argparse extensions implementing custom behaviors for carputils |
| ►Ncml | |
| Ndataproc | |
| Ndebug | Some tools for running jobs in the debugger |
| Ndebugging | Debugging utilities |
| Ndivertoutput | Execute external processes with output buffering and error checking |
| Necg | |
| Nep | Helper tools for setting up electrophysiology simulations |
| Nfigui | |
| ►Nfitting | |
| ►Nforcepss | |
| Nformat | Output formatting utilities |
| ►Njob | This package most importantly defines the :class:~carputils.job.Job class, which provides methods for executing bash commands |
| Nlats | |
| ►Nmachines | Platform-specific functionality such as MPI launcher generation |
| ►Nmesh | Classes and routines for the generation of geometric meshes |
| ►Nmodel | |
| Nplot | |
| Npolling | Functions for generating and executing openCARP polling files |
| Nprompt | User query functions |
| Nrestitute | Functions for single-cell APD restitution |
| Nserialise | Functions for serialising and deserialising datetime and timedelta objects |
| ►Nsettings | This module manages and exposes carputils settings |
| Nstates | |
| Nstream | Some tools for handling output streams (stdout, etc.) |
| Nsvn | SVN utilites |
| Ntools | |
| Ntuning | Tune conductivity settings to match prescribed conduction velocities |
| Nrun | |
| Ntest_simple_bundle |
1.8.13