Voltage clamp experiments (incomplete)
See code in GitLab.
Author: Gernot Plank gernot.plank@medunigraz.at
This example explains the basic usage of bench for performing voltage clamp experiments (example incomplete!)
Basic usage
To run the experiments of this tutorial change directories as follows:
cd ${TUTORIALS}/01_EP_single_cell/03A_voltage_clamp# run clamp experiment
bench --imp tenTusscherPanfilov --clamp -40.0 --clamp-dur 200 --clamp-start 10 --validate --duration 500 --stim-curr 0. --fout=./VmClamp
# convert to hdf5 for limpetGUI visualization
bin2h5.py VmClamp_header.txt svclamp.h5
txt2h5.py tenTusscherPanfilov_trace_header.txt Trace_0.dat curclamp.h5
# visualize
limpetGUIpyQt svclamp.h5
limpetGUIpyQt curclamp.h5