Onboarding tutorials in openCARP JupyterLab
You will have the best experience with the tutorials, if you run openCARP JupyterLab in a local Docker installation. Follow the instructions to set up Docker locally. After the openCARP Docker is running, you should reload this page. If you try this on a Mac, please don't use Safari, as you wouldn't get a connection to localhost. Firefox or Chrome should work.
If you don't want to use a local Docker version, you can continue with just clicking on the cards. Binder will be opened, but you have limited resorces, it will take some time to start the front page and all data and input will be lost if you restart after some time.
Single Cell Tutorials
Aim of the single cell tutorials is to make you familiar with the command line interface of the single cell electrophysiology model program bench to develop single cell experiments. You also will learn basics about carputils. We strongy suggest to go through them in sequence.
All onboarding tutorials will be opened on BinderHub.
All onboarding tutorials will be opened using your locally running Jupyter Lab.
Overview page of onboarding tutorials
If you want to start from the base and see this overview directly in openCARP JupyterLab`.
Basic functionality I
The first tutorial should familiarize you with the basic functionality of the ionic model program `bench`.
Basic functionality II
The second tutorial should familiarize you with futher basic functionality of the ionic cell model program bench.
Advanced functionality I
The third single cell tutorial should familiarize you with some advanced functionality of the ionic cell model program bench.
Tissue Tutorials
Aim of the tissue tutorials is to make you familiar with the command line interface of the cardiac electrophysiology simuation program openCARP to develop tissue experiments. You will also learn further functionality of carputils. We strongy suggest to go through them in sequence.
All onboarding tutorials will be opened on BinderHub.
All onboarding tutorials will be opened using your locally running Jupyter Lab.
Eikonal Tutorials
The aim of this tutorial is to teach the required parameters for running Eikonal/Reaction-Eikonal/DREAM simulations in openCARP.
All onboarding tutorials will be opened on BinderHub.
All onboarding tutorials will be opened using your locally running Jupyter Lab.
